# # Copyright (C) Stanislaw Adaszewski, 2020 # License: GPLv3 # """ This module implements the basic convolutional blocks of Decagon. Just as a quick reminder, the basic convolution formula here is: y = A * (x * W) where: W is a weight matrix A is an adjacency matrix x is a matrix of latent representations of a particular type of neighbors. As we have x here twice, a trick is obviously necessary for this to work. A must be previously normalized with: c_{r}^{ij} = 1/sqrt(|N_{r}^{i}| |N_{r}^{j}|) or c_{r}^{i} = 1/|N_{r}^{i}| Let's work through this step by step to convince ourselves that the formula is correct. x = [ [0, 1, 0, 1], [1, 1, 1, 0], [0, 0, 0, 1] ] W = [ [0, 1], [1, 0], [0.5, 0.5], [0.25, 0.75] ] A = [ [0, 1, 0], [1, 0, 1], [0, 1, 0] ] so the graph looks like this: (0) -- (1) -- (2) and therefore the representations in the next layer should be: h_{0}^{k+1} = c_{r}^{0,1} * h_{1}^{k} * W + c_{r}^{0} * h_{0}^{k} h_{1}^{k+1} = c_{r}^{0,1} * h_{0}^{k} * W + c_{r}^{2,1} * h_{2}^{k} + c_{r}^{1} * h_{1}^{k} h_{2}^{k+1} = c_{r}^{2,1} * h_{1}^{k} * W + c_{r}^{2} * h_{2}^{k} In actual Decagon code we can see that that latter part propagating directly the old representation is gone. I will try to do the same for now. So we have to only take care of: h_{0}^{k+1} = c_{r}^{0,1} * h_{1}^{k} * W h_{1}^{k+1} = c_{r}^{0,1} * h_{0}^{k} * W + c_{r}^{2,1} * h_{2}^{k} h_{2}^{k+1} = c_{r}^{2,1} * h_{1}^{k} * W If A is square the Decagon's EdgeMinibatchIterator preprocesses it as follows: A = A + eye(len(A)) rowsum = A.sum(1) deg_mat_inv_sqrt = diags(power(rowsum, -0.5)) A = dot(A, deg_mat_inv_sqrt) A = A.transpose() A = A.dot(deg_mat_inv_sqrt) Let's see what gives in our case: A = A + eye(len(A)) [ [1, 1, 0], [1, 1, 1], [0, 1, 1] ] rowsum = A.sum(1) [2, 3, 2] deg_mat_inv_sqrt = diags(power(rowsum, -0.5)) [ [1./sqrt(2), 0, 0], [0, 1./sqrt(3), 0], [0, 0, 1./sqrt(2)] ] A = dot(A, deg_mat_inv_sqrt) [ [ 1/sqrt(2), 1/sqrt(3), 0 ], [ 1/sqrt(2), 1/sqrt(3), 1/sqrt(2) ], [ 0, 1/sqrt(3), 1/sqrt(2) ] ] A = A.transpose() [ [ 1/sqrt(2), 1/sqrt(2), 0 ], [ 1/sqrt(3), 1/sqrt(3), 1/sqrt(3) ], [ 0, 1/sqrt(2), 1/sqrt(2) ] ] A = A.dot(deg_mat_inv_sqrt) [ [ 1/sqrt(2) * 1/sqrt(2), 1/sqrt(2) * 1/sqrt(3), 0 ], [ 1/sqrt(3) * 1/sqrt(2), 1/sqrt(3) * 1/sqrt(3), 1/sqrt(3) * 1/sqrt(2) ], [ 0, 1/sqrt(2) * 1/sqrt(3), 1/sqrt(2) * 1/sqrt(2) ], ] thus: [ [0.5 , 0.40824829, 0. ], [0.40824829, 0.33333333, 0.40824829], [0. , 0.40824829, 0.5 ] ] This checks out with the 1/sqrt(|N_{r}^{i}| |N_{r}^{j}|) formula. Then, we get back to the main calculation: y = x * W y = A * y y = x * W [ [ 1.25, 0.75 ], [ 1.5 , 1.5 ], [ 0.25, 0.75 ] ] y = A * y [ 0.5 * [ 1.25, 0.75 ] + 0.40824829 * [ 1.5, 1.5 ], 0.40824829 * [ 1.25, 0.75 ] + 0.33333333 * [ 1.5, 1.5 ] + 0.40824829 * [ 0.25, 0.75 ], 0.40824829 * [ 1.5, 1.5 ] + 0.5 * [ 0.25, 0.75 ] ] that is: [ [1.23737243, 0.98737244], [1.11237243, 1.11237243], [0.73737244, 0.98737244] ]. All checks out nicely, good. """ from .dense import * from .sparse import * from .universal import *