decagon-pytorch/tests/icosagon/test_input.py

from icosagon.input import InputLayer, \
    OneHotInputLayer
from icosagon.data import Data
import torch
import pytest


def _some_data():
    d = Data()
    d.add_node_type('Gene', 1000)
    d.add_node_type('Drug', 100)

    fam = d.add_relation_family('Drug-Gene', 1, 0, True)
    fam.add_relation_type('Target', torch.rand(100, 1000))

    fam = d.add_relation_family('Gene-Gene', 0, 0, False)
    fam.add_relation_type('Interaction', torch.rand(1000, 1000))

    fam = d.add_relation_family('Drug-Drug', 1, 1, False)
    fam.add_relation_type('Side Effect: Nausea', torch.rand(100, 100))
    fam.add_relation_type('Side Effect: Infertility', torch.rand(100, 100))
    fam.add_relation_type('Side Effect: Death', torch.rand(100, 100))
    return d


def test_input_layer_01():
    d = _some_data()
    for output_dim in [32, 64, 128]:
        layer = InputLayer(d, output_dim)
        assert layer.output_dim[0] == output_dim
        assert len(layer.node_reps) == 2
        assert layer.node_reps[0].shape == (1000, output_dim)
        assert layer.node_reps[1].shape == (100, output_dim)
        assert layer.data == d


def test_input_layer_02():
    d = _some_data()
    layer = InputLayer(d, 32)
    res = layer(None)
    assert isinstance(res[0], torch.Tensor)
    assert isinstance(res[1], torch.Tensor)
    assert res[0].shape == (1000, 32)
    assert res[1].shape == (100, 32)
    assert torch.all(res[0] == layer.node_reps[0])
    assert torch.all(res[1] == layer.node_reps[1])


def test_input_layer_03():
    if torch.cuda.device_count() == 0:
        pytest.skip('No CUDA devices on this host')
    d = _some_data()
    layer = InputLayer(d, 32)
    device = torch.device('cuda:0')
    layer = layer.to(device)
    print(list(layer.parameters()))
    # assert layer.device.type == 'cuda:0'
    assert layer.node_reps[0].device == device
    assert layer.node_reps[1].device == device


def test_input_layer_04():
    d = _some_data()
    layer = InputLayer(d, 32)
    s = repr(layer)
    assert s.startswith('Icosagon input layer')


def test_one_hot_input_layer_01():
    d = _some_data()
    layer = OneHotInputLayer(d)
    assert layer.output_dim == [1000, 100]
    assert len(layer.node_reps) == 2
    assert layer.node_reps[0].shape == (1000, 1000)
    assert layer.node_reps[1].shape == (100, 100)
    assert layer.data == d
    assert layer.is_sparse


def test_one_hot_input_layer_02():
    d = _some_data()
    layer = OneHotInputLayer(d)
    res = layer(None)
    assert isinstance(res[0], torch.Tensor)
    assert isinstance(res[1], torch.Tensor)
    assert res[0].shape == (1000, 1000)
    assert res[1].shape == (100, 100)
    assert torch.all(res[0].to_dense() == layer.node_reps[0].to_dense())
    assert torch.all(res[1].to_dense() == layer.node_reps[1].to_dense())


def test_one_hot_input_layer_03():
    if torch.cuda.device_count() == 0:
        pytest.skip('No CUDA devices on this host')
    d = _some_data()
    layer = OneHotInputLayer(d)
    device = torch.device('cuda:0')
    layer = layer.to(device)
    print(list(layer.parameters()))
    # assert layer.device.type == 'cuda:0'
    assert layer.node_reps[0].device == device
    assert layer.node_reps[1].device == device


def test_one_hot_input_layer_04():
    d = _some_data()
    layer = OneHotInputLayer(d)
    s = repr(layer)
    assert s.startswith('Icosagon one-hot input layer')