decagon-pytorch/tests/icosagon/test_declayer.py

#
# Copyright (C) Stanislaw Adaszewski, 2020
# License: GPLv3
#


from icosagon.input import OneHotInputLayer
from icosagon.convolve import DropoutGraphConvActivation
from icosagon.convlayer import DecagonLayer
from icosagon.declayer import DecodeLayer, \
    Predictions, \
    RelationFamilyPredictions, \
    RelationPredictions
from icosagon.decode import DEDICOMDecoder, \
    InnerProductDecoder
from icosagon.data import Data
from icosagon.trainprep import prepare_training, \
    TrainValTest
import torch


def test_decode_layer_01():
    d = Data()
    d.add_node_type('Dummy', 100)

    fam = d.add_relation_family('Dummy-Dummy', 0, 0, False)
    fam.add_relation_type('Dummy Relation 1',
        torch.rand((100, 100), dtype=torch.float32).round().to_sparse())

    prep_d = prepare_training(d, TrainValTest(.8, .1, .1))
    in_layer = OneHotInputLayer(d)
    d_layer = DecagonLayer(in_layer.output_dim, 32, d)
    seq = torch.nn.Sequential(in_layer, d_layer)
    last_layer_repr = seq(None)

    dec = DecodeLayer(input_dim=d_layer.output_dim, data=prep_d, keep_prob=1.,
        activation=lambda x: x)
    pred = dec(last_layer_repr)

    assert isinstance(pred, Predictions)

    assert isinstance(pred.relation_families, list)
    assert len(pred.relation_families) == 1
    assert isinstance(pred.relation_families[0], RelationFamilyPredictions)

    assert isinstance(pred.relation_families[0].relation_types, list)
    assert len(pred.relation_families[0].relation_types) == 1
    assert isinstance(pred.relation_families[0].relation_types[0], RelationPredictions)

    tmp = pred.relation_families[0].relation_types[0]
    assert isinstance(tmp.edges_pos, TrainValTest)
    assert isinstance(tmp.edges_neg, TrainValTest)
    assert isinstance(tmp.edges_back_pos, TrainValTest)
    assert isinstance(tmp.edges_back_neg, TrainValTest)


def test_decode_layer_02():
    d = Data()
    d.add_node_type('Dummy', 100)
    fam = d.add_relation_family('Dummy-Dummy', 0, 0, False)
    fam.add_relation_type('Dummy Relation 1',
        torch.rand((100, 100), dtype=torch.float32).round().to_sparse())
    prep_d = prepare_training(d, TrainValTest(.8, .1, .1))

    in_layer = OneHotInputLayer(d)
    d_layer = DecagonLayer(in_layer.output_dim, 32, d)
    dec_layer = DecodeLayer(input_dim=d_layer.output_dim, data=prep_d,
        keep_prob=1., activation=lambda x: x)
    seq = torch.nn.Sequential(in_layer, d_layer, dec_layer)

    pred = seq(None)

    assert isinstance(pred, Predictions)
    assert len(pred.relation_families) == 1
    assert isinstance(pred.relation_families[0], RelationFamilyPredictions)
    assert isinstance(pred.relation_families[0].relation_types, list)
    assert len(pred.relation_families[0].relation_types) == 1


def test_decode_layer_03():
    d = Data()
    d.add_node_type('Dummy 1', 100)
    d.add_node_type('Dummy 2', 100)
    fam = d.add_relation_family('Dummy 1-Dummy 2', 0, 1, True)
    fam.add_relation_type('Dummy Relation 1',
        torch.rand((100, 100), dtype=torch.float32).round().to_sparse())
    prep_d = prepare_training(d, TrainValTest(.8, .1, .1))

    in_layer = OneHotInputLayer(d)
    d_layer = DecagonLayer(in_layer.output_dim, 32, d)
    dec_layer = DecodeLayer(input_dim=d_layer.output_dim, data=prep_d,
        keep_prob=1., activation=lambda x: x)
    seq = torch.nn.Sequential(in_layer, d_layer, dec_layer)

    pred = seq(None)
    assert isinstance(pred, Predictions)
    assert len(pred.relation_families) == 1
    assert isinstance(pred.relation_families[0], RelationFamilyPredictions)
    assert isinstance(pred.relation_families[0].relation_types, list)
    assert len(pred.relation_families[0].relation_types) == 1
    assert isinstance(pred.relation_families[0].relation_types[0], RelationPredictions)


def test_decode_layer_04():
    d = Data()
    d.add_node_type('Dummy', 100)
    assert len(d.relation_families) == 0

    prep_d = prepare_training(d, TrainValTest(.8, .1, .1))

    in_layer = OneHotInputLayer(d)
    d_layer = DecagonLayer(in_layer.output_dim, 32, d)
    dec_layer = DecodeLayer(input_dim=d_layer.output_dim, data=prep_d,
        keep_prob=1., activation=lambda x: x)
    seq = torch.nn.Sequential(in_layer, d_layer, dec_layer)

    pred = seq(None)

    assert isinstance(pred, Predictions)
    assert len(pred.relation_families) == 0


def test_decode_layer_05():
    d = Data()
    d.add_node_type('Dummy', 10)
    mat = torch.rand((10, 10))
    mat = (mat + mat.transpose(0, 1)) / 2
    mat = mat.round()
    fam = d.add_relation_family('Dummy-Dummy', 0, 0, True,
        decoder_class=InnerProductDecoder)
    fam.add_relation_type('Dummy Rel', mat.to_sparse())
    prep_d = prepare_training(d, TrainValTest(1., 0., 0.))

    in_layer = OneHotInputLayer(d)
    conv_layer = DecagonLayer(in_layer.output_dim, 32, prep_d,
        rel_activation=lambda x: x, layer_activation=lambda x: x)
    dec_layer = DecodeLayer(conv_layer.output_dim, prep_d,
        keep_prob=1., activation=lambda x: x)
    seq = torch.nn.Sequential(in_layer, conv_layer, dec_layer)

    pred = seq(None)
    rel_pred = pred.relation_families[0].relation_types[0]

    for edge_type in ['edges_pos', 'edges_neg', 'edges_back_pos', 'edges_back_neg']:
        edge_pred = getattr(rel_pred, edge_type)
        assert isinstance(edge_pred, TrainValTest)
        for part_type in ['train', 'val', 'test']:
            part_pred = getattr(edge_pred, part_type)
            assert isinstance(part_pred, torch.Tensor)
            assert len(part_pred.shape) == 1
            print(edge_type, part_type, part_pred.shape)
            if (edge_type, part_type) not in [('edges_pos', 'train'), ('edges_neg', 'train')]:
                assert part_pred.shape[0] == 0
            else:
                assert part_pred.shape[0] > 0

    prep_rel = prep_d.relation_families[0].relation_types[0]
    assert len(rel_pred.edges_pos.train) == len(prep_rel.edges_pos.train)
    assert len(rel_pred.edges_neg.train) == len(prep_rel.edges_neg.train)

    assert len(prep_rel.edges_pos.train) == torch.sum(mat)

    # print('Predictions for positive edges:')
    # print(rel_pred.edges_pos.train)
    # print('Predictions for negative edges:')
    # print(rel_pred.edges_neg.train)

    repr_in = in_layer(None)
    assert isinstance(repr_in, list)
    assert len(repr_in) == 1
    assert isinstance(repr_in[0], torch.Tensor)
    assert torch.all(repr_in[0].to_dense() == torch.eye(10))

    assert len(conv_layer.next_layer_repr[0]) == 1
    assert len(conv_layer.next_layer_repr[0][0].convolutions) == 1
    assert conv_layer.rel_activation(0) == 0
    assert conv_layer.rel_activation(1) == 1
    assert conv_layer.rel_activation(-1) == -1
    assert conv_layer.layer_activation(0) == 0
    assert conv_layer.layer_activation(1) == 1
    assert conv_layer.layer_activation(-1) == -1

    graph_conv = conv_layer.next_layer_repr[0][0].convolutions[0]
    assert isinstance(graph_conv, DropoutGraphConvActivation)
    assert graph_conv.activation(0) == 0
    assert graph_conv.activation(1) == 1
    assert graph_conv.activation(-1) == -1
    weight = graph_conv.graph_conv.weight
    adj_mat = prep_d.relation_families[0].relation_types[0].adjacency_matrix
    repr_conv = torch.sparse.mm(repr_in[0], weight)
    repr_conv = torch.mm(adj_mat, repr_conv)
    repr_conv = torch.nn.functional.normalize(repr_conv, p=2, dim=1)
    repr_conv_expect = conv_layer(repr_in)[0]
    print('repr_conv:\n', repr_conv)
    # print(repr_conv_expect)
    assert torch.all(repr_conv == repr_conv_expect)
    assert repr_conv.shape[1] == 32

    dec = InnerProductDecoder(32, 1, keep_prob=1., activation=lambda x: x)
    x, y = torch.meshgrid(torch.arange(0, 10), torch.arange(0, 10))
    x = x.flatten()
    y = y.flatten()
    repr_dec_expect = dec(repr_conv[x], repr_conv[y], 0)
    repr_dec_expect = repr_dec_expect.view(10, 10)

    repr_dec = torch.mm(repr_conv, torch.transpose(repr_conv, 0, 1))
    # repr_dec = torch.flatten(repr_dec)
    # repr_dec -= torch.eye(10)
    assert torch.all(torch.abs(repr_dec - repr_dec_expect) < 0.000001)

    repr_dec_expect = torch.zeros((10, 10))
    x = prep_d.relation_families[0].relation_types[0].edges_pos.train
    repr_dec_expect[x[:, 0], x[:, 1]] = pred.relation_families[0].relation_types[0].edges_pos.train
    x = prep_d.relation_families[0].relation_types[0].edges_neg.train
    repr_dec_expect[x[:, 0], x[:, 1]] = pred.relation_families[0].relation_types[0].edges_neg.train
    print(repr_dec)
    print(repr_dec_expect)

    repr_dec = torch.zeros((10, 10))
    x = prep_d.relation_families[0].relation_types[0].edges_pos.train
    repr_dec[x[:, 0], x[:, 1]] = dec(repr_conv[x[:, 0]], repr_conv[x[:, 1]], 0)
    x = prep_d.relation_families[0].relation_types[0].edges_neg.train
    repr_dec[x[:, 0], x[:, 1]] = dec(repr_conv[x[:, 0]], repr_conv[x[:, 1]], 0)

    assert torch.all(torch.abs(repr_dec - repr_dec_expect) < 0.000001)

    #print(prep_rel.edges_pos.train)
    #print(prep_rel.edges_neg.train)

    # assert isinstance(edge_pred.train)
    # assert isinstance(rel_pred.edges_pos, TrainValTest)
    # assert isinstance(rel_pred.edges_neg, TrainValTest)
    # assert isinstance(rel_pred.edges_back_pos, TrainValTest)
    # assert isinstance(rel_pred.edges_back_neg, TrainValTest)


def test_decode_layer_parameter_count_01():
    d = Data()
    d.add_node_type('Dummy', 100)

    fam = d.add_relation_family('Dummy-Dummy', 0, 0, False)
    fam.add_relation_type('Dummy Relation 1',
        torch.rand((100, 100), dtype=torch.float32).round().to_sparse())

    prep_d = prepare_training(d, TrainValTest(.8, .1, .1))

    dec = DecodeLayer(input_dim=[ 32 ], data=prep_d, keep_prob=1.,
        activation=lambda x: x)

    assert len(list(dec.parameters())) == 2


def test_decode_layer_parameter_count_02():
    d = Data()
    d.add_node_type('Dummy', 100)

    fam = d.add_relation_family('Dummy-Dummy', 0, 0, False)
    fam.add_relation_type('Dummy Relation 1',
        torch.rand((100, 100), dtype=torch.float32).round().to_sparse())
    fam.add_relation_type('Dummy Relation 2',
        torch.rand((100, 100), dtype=torch.float32).round().to_sparse())

    prep_d = prepare_training(d, TrainValTest(.8, .1, .1))

    dec = DecodeLayer(input_dim=[ 32 ], data=prep_d, keep_prob=1.,
        activation=lambda x: x)

    assert len(list(dec.parameters())) == 3


def test_decode_layer_parameter_count_03():
    d = Data()
    d.add_node_type('Dummy', 100)

    for _ in range(2):
        fam = d.add_relation_family('Dummy-Dummy', 0, 0, False)
        fam.add_relation_type('Dummy Relation 1',
            torch.rand((100, 100), dtype=torch.float32).round().to_sparse())
        fam.add_relation_type('Dummy Relation 2',
            torch.rand((100, 100), dtype=torch.float32).round().to_sparse())

    prep_d = prepare_training(d, TrainValTest(.8, .1, .1))

    dec = DecodeLayer(input_dim=[ 32 ], data=prep_d, keep_prob=1.,
        activation=lambda x: x)

    assert len(list(dec.parameters())) == 6