IF YOU WOULD LIKE TO GET AN ACCOUNT, please write an email to s dot adaszewski at gmail dot com. User accounts are meant only to report issues and/or generate pull requests. This is a purpose-specific Git hosting for ADARED projects. Thank you for your understanding!
Du kan inte välja fler än 25 ämnen Ämnen måste starta med en bokstav eller siffra, kan innehålla bindestreck ('-') och vara max 35 tecken långa.

test_data.py 2.1KB

4 år sedan
4 år sedan
4 år sedan
4 år sedan
4 år sedan
4 år sedan
4 år sedan
4 år sedan
4 år sedan
4 år sedan
4 år sedan
123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566
  1. #
  2. # Copyright (C) Stanislaw Adaszewski, 2020
  3. # License: GPLv3
  4. #
  5. from icosagon import Data
  6. import torch
  7. import pytest
  8. def test_data_01():
  9. d = Data()
  10. d.add_node_type('Gene', 1000)
  11. d.add_node_type('Drug', 100)
  12. dummy_0 = torch.zeros((100, 1000))
  13. dummy_1 = torch.zeros((1000, 100))
  14. dummy_2 = torch.zeros((100, 100))
  15. dummy_3 = torch.zeros((1000, 1000))
  16. fam = d.add_relation_family('Drug-Gene', 1, 0, True)
  17. fam.add_relation_type('Target', 1, 0, dummy_0)
  18. fam = d.add_relation_family('Gene-Gene', 0, 0, True)
  19. fam.add_relation_type('Interaction', 0, 0, dummy_3)
  20. fam = d.add_relation_family('Drug-Drug', 1, 1, True)
  21. fam.add_relation_type('Side Effect: Nausea', 1, 1, dummy_2)
  22. fam.add_relation_type('Side Effect: Infertility', 1, 1, dummy_2)
  23. fam.add_relation_type('Side Effect: Death', 1, 1, dummy_2)
  24. print(d)
  25. def test_data_02():
  26. d = Data()
  27. d.add_node_type('Gene', 1000)
  28. d.add_node_type('Drug', 100)
  29. dummy_0 = torch.zeros((100, 1000))
  30. dummy_1 = torch.zeros((1000, 100))
  31. dummy_2 = torch.zeros((100, 100))
  32. dummy_3 = torch.zeros((1000, 1000))
  33. fam = d.add_relation_family('Drug-Gene', 1, 0, True)
  34. with pytest.raises(ValueError):
  35. fam.add_relation_type('Target', 1, 0, dummy_1)
  36. fam = d.add_relation_family('Gene-Gene', 0, 0, True)
  37. with pytest.raises(ValueError):
  38. fam.add_relation_type('Interaction', 0, 0, dummy_2)
  39. fam = d.add_relation_family('Drug-Drug', 1, 1, True)
  40. with pytest.raises(ValueError):
  41. fam.add_relation_type('Side Effect: Nausea', 1, 1, dummy_3)
  42. with pytest.raises(ValueError):
  43. fam.add_relation_type('Side Effect: Infertility', 1, 1, dummy_3)
  44. with pytest.raises(ValueError):
  45. fam.add_relation_type('Side Effect: Death', 1, 1, dummy_3)
  46. print(d)
  47. def test_data_03():
  48. d = Data()
  49. d.add_node_type('Gene', 1000)
  50. d.add_node_type('Drug', 100)
  51. fam = d.add_relation_family('Drug-Gene', 1, 0, True)
  52. with pytest.raises(ValueError):
  53. fam.add_relation_type('Target', 1, 0, None)
  54. print(d)