from icosagon.normalize import add_eye_sparse, \ norm_adj_mat_one_node_type_sparse, \ norm_adj_mat_one_node_type_dense, \ norm_adj_mat_one_node_type, \ norm_adj_mat_two_node_types_sparse, \ norm_adj_mat_two_node_types_dense, \ norm_adj_mat_two_node_types import decagon_pytorch.normalize import torch import pytest import numpy as np from math import sqrt def test_add_eye_sparse_01(): adj_mat_dense = torch.rand((10, 10)) adj_mat_sparse = adj_mat_dense.to_sparse() adj_mat_dense += torch.eye(10) adj_mat_sparse = add_eye_sparse(adj_mat_sparse) assert torch.all(adj_mat_sparse.to_dense() == adj_mat_dense) def test_add_eye_sparse_02(): adj_mat_dense = torch.rand((10, 20)) adj_mat_sparse = adj_mat_dense.to_sparse() with pytest.raises(ValueError): _ = add_eye_sparse(adj_mat_sparse) def test_add_eye_sparse_03(): adj_mat_dense = torch.rand((10, 10)) with pytest.raises(ValueError): _ = add_eye_sparse(adj_mat_dense) def test_add_eye_sparse_04(): adj_mat_dense = np.random.rand(10, 10) with pytest.raises(ValueError): _ = add_eye_sparse(adj_mat_dense) def test_norm_adj_mat_one_node_type_sparse_01(): adj_mat = torch.rand((10, 10)) adj_mat = (adj_mat > .5).to(torch.float32) adj_mat = adj_mat.to_sparse() _ = norm_adj_mat_one_node_type_sparse(adj_mat) def test_norm_adj_mat_one_node_type_sparse_02(): adj_mat_dense = torch.rand((10, 10)) adj_mat_dense = (adj_mat_dense > .5).to(torch.float32) adj_mat_sparse = adj_mat_dense.to_sparse() adj_mat_sparse = norm_adj_mat_one_node_type_sparse(adj_mat_sparse) adj_mat_dense = norm_adj_mat_one_node_type_dense(adj_mat_dense) assert torch.all(adj_mat_sparse.to_dense() - adj_mat_dense < 0.000001) def test_norm_adj_mat_one_node_type_dense_01(): adj_mat = torch.rand((10, 10)) adj_mat = (adj_mat > .5) _ = norm_adj_mat_one_node_type_dense(adj_mat) def test_norm_adj_mat_one_node_type_dense_02(): adj_mat = torch.tensor([ [0, 1, 1, 0], # 3 [1, 0, 1, 0], # 3 [1, 1, 0, 1], # 4 [0, 0, 1, 0] # 2 # 3 3 4 2 ]) expect_denom = np.array([ [ 3, 3, sqrt(3)*2, sqrt(6) ], [ 3, 3, sqrt(3)*2, sqrt(6) ], [ sqrt(3)*2, sqrt(3)*2, 4, sqrt(2)*2 ], [ sqrt(6), sqrt(6), sqrt(2)*2, 2 ] ], dtype=np.float32) expect = (adj_mat.detach().cpu().numpy().astype(np.float32) + np.eye(4)) / expect_denom # expect = np.array([ # [1/3, 1/3, 1/3, 0], # [1/3, 1/3, 1/3, 0], # [1/4, 1/4, 1/4, 1/4], # [0, 0, 1/2, 1/2] # ], dtype=np.float32) res = decagon_pytorch.normalize.norm_adj_mat_one_node_type(adj_mat) res = res.todense().astype(np.float32) print('res:', res) print('expect:', expect) assert np.all(res - expect < 0.000001) def test_norm_adj_mat_one_node_type_dense_03(): # adj_mat = torch.rand((10, 10)) adj_mat = torch.tensor([ [0, 1, 1, 0, 0], [1, 0, 1, 0, 1], [1, 1, 0, .5, .5], [0, 0, .5, 0, 1], [0, 1, .5, 1, 0] ]) # adj_mat = (adj_mat > .5) adj_mat_dec = decagon_pytorch.normalize.norm_adj_mat_one_node_type(adj_mat) adj_mat_ico = norm_adj_mat_one_node_type_dense(adj_mat) adj_mat_dec = adj_mat_dec.todense() adj_mat_ico = adj_mat_ico.detach().cpu().numpy() print('adj_mat_dec:', adj_mat_dec) print('adj_mat_ico:', adj_mat_ico) assert np.all(adj_mat_dec - adj_mat_ico < 0.000001) def test_norm_adj_mat_two_node_types_sparse_01(): adj_mat = torch.rand((10, 20)) adj_mat = (adj_mat > .5) adj_mat = adj_mat.to_sparse() _ = norm_adj_mat_two_node_types_sparse(adj_mat) def test_norm_adj_mat_two_node_types_sparse_02(): adj_mat_dense = torch.rand((10, 20)) adj_mat_dense = (adj_mat_dense > .5) adj_mat_sparse = adj_mat_dense.to_sparse() adj_mat_sparse = norm_adj_mat_two_node_types_sparse(adj_mat_sparse) adj_mat_dense = norm_adj_mat_two_node_types_dense(adj_mat_dense) assert torch.all(adj_mat_sparse.to_dense() - adj_mat_dense < 0.000001) def test_norm_adj_mat_two_node_types_dense_01(): adj_mat = torch.rand((10, 20)) adj_mat = (adj_mat > .5) _ = norm_adj_mat_two_node_types_dense(adj_mat) def test_norm_adj_mat_two_node_types_dense_02(): adj_mat = torch.tensor([ [0, 1, 1, 0], # 2 [1, 0, 1, 0], # 2 [1, 1, 0, 1], # 3 [0, 0, 1, 0] # 1 # 2 2 3 1 ]) expect_denom = np.array([ [ 2, 2, sqrt(6), sqrt(2) ], [ 2, 2, sqrt(6), sqrt(2) ], [ sqrt(6), sqrt(6), 3, sqrt(3) ], [ sqrt(2), sqrt(2), sqrt(3), 1 ] ], dtype=np.float32) expect = adj_mat.detach().cpu().numpy().astype(np.float32) / expect_denom res = decagon_pytorch.normalize.norm_adj_mat_two_node_types(adj_mat) res = res.todense().astype(np.float32) print('res:', res) print('expect:', expect) assert np.all(res - expect < 0.000001) def test_norm_adj_mat_two_node_types_dense_03(): adj_mat = torch.tensor([ [0, 1, 1, 0, 0], [1, 0, 1, 0, 1], [1, 1, 0, .5, .5], [0, 0, .5, 0, 1], [0, 1, .5, 1, 0] ]) adj_mat_dec = decagon_pytorch.normalize.norm_adj_mat_two_node_types(adj_mat) adj_mat_ico = norm_adj_mat_two_node_types_dense(adj_mat) adj_mat_dec = adj_mat_dec.todense() adj_mat_ico = adj_mat_ico.detach().cpu().numpy() print('adj_mat_dec:', adj_mat_dec) print('adj_mat_ico:', adj_mat_ico) assert np.all(adj_mat_dec - adj_mat_ico < 0.000001) def test_norm_adj_mat_two_node_types_dense_04(): adj_mat = torch.rand((10, 20)) adj_mat_dec = decagon_pytorch.normalize.norm_adj_mat_two_node_types(adj_mat) adj_mat_ico = norm_adj_mat_two_node_types_dense(adj_mat) adj_mat_dec = adj_mat_dec.todense() adj_mat_ico = adj_mat_ico.detach().cpu().numpy() print('adj_mat_dec:', adj_mat_dec) print('adj_mat_ico:', adj_mat_ico) assert np.all(adj_mat_dec - adj_mat_ico < 0.000001)